RnoEX0039582 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10672535-10679139:-
Coord C1 exon
chr3:10679089-10679139
Coord A exon
chr3:10678419-10678501
Coord C2 exon
chr3:10672535-10672572
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTCTTCCTTTGGCAGGAT
3' ss Score
9.91
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTGGCTTCAGTCTTGATCGGACCAAGAATGATGGCTTTTCTTCTTACCTG
Seq A exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAAAAGTCCATGTCTTCTGTCACTCTGCTCATCTTAGACATCTCCGGAAGTGG
Seq C2 exon
ATGGTTCCAAGGCTCAACGAAGTACAGTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589_MULTIEX2-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000037742fB6173
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCAGTCTTGATCGGAC
R:
CTTTGAATCCACTGTACTTCGTTGA
Band lengths:
87-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]