MmuEX6100332 @ mm10
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31168164-31172081:+
Coord C1 exon
chr2:31168164-31168214
Coord A exon
chr2:31168797-31168879
Coord C2 exon
chr2:31171942-31172081
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTCTTCCTTTGGCAGGAT
3' ss Score
9.91
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATCGGATTCAGTCTGGATCGGACTAAGAACGATGGCTTTTCTTCTTACCTG
Seq A exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAGAAGTCCATGTCTTCTGTCACTCTTGTCATCTTAGACATCTCTGGAAGCAT
Seq C2 exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGTAAGCAGTTACCAGAGATTGTCTTCAGCAAGGATGAGAAAATCCTGAGTCAGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGTGAGGCTCGGAGAACCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-'15-6,'15-4,16-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.401
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATTCAGTCTGGATCGGA
R:
GTCTTTGGGGTTGGAGCTGAC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types