HsaEX0028225 @ hg19
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132838691-132842048:+
Coord C1 exon
chr9:132838691-132838741
Coord A exon
chr9:132839578-132839657
Coord C2 exon
chr9:132841909-132842048
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTGGCTCTTCCTTTCTCAGGAT
3' ss Score
10.76
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
ATTGGATTTAGCCTAGACCGTACAAAGAATGATGGCTTTTCTTCTTACCTG
Seq A exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAACAGTCTGTCTCTGTCACCCTTTTAATCCTAGACATCTCCAGAAGTGA
Seq C2 exon
GGTAAGAGTAAAGTCTCCACCAGAAGCTGGTACCCAGTTACCAAAGATCATCTTCAGCAGGGATGAGAAAGTCCTTGGTCAGAGCCAGGAGCCTAATGTTAACCCTGCTTCAGCAGGCAACCAGACCCAGAAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGTACAAAGAATGATGGCT
R:
GTGTCTTCTGGGTCTGGTTGC
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)