DreEX0035777 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31886384-31888960:-
Coord C1 exon
chr5:31888910-31888960
Coord A exon
chr5:31886627-31886715
Coord C2 exon
chr5:31886384-31886523
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTATGAACGCACAGGAT
3' ss Score
5.43
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ATTGGTTTCAGCCTTGATCGTGTAAACAATAATGGTTTCTCTACATACCTG
Seq A exon
GATGAGGGTCTAGATTACTGTCCTCTGAAAAAGGATCCAAGTAGTAGTTTCGCTGGAGTGCTTCTCTTACTGGACTTTAAGCATAATCT
Seq C2 exon
TGTCAAGAAAAAGACTTCAGCAGAGACGGGCGTTTTTCCCAAAATCATGGCTGTGCCACCTAAAAAATCTGAAGAGGTGCAAGTTGAAAAGGGGAAGGAACCCCAAAACAAGGAGCCAGATGATGGATCTCAGTCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTCAGCCTTGATCGTGT
R:
TGGCTCCTTGTTTTGGGGTTC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]