DreEX6034311 @ danRer10
Exon Skipping
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58366796-58367403:+
Coord C1 exon
chr1:58366796-58366846
Coord A exon
chr1:58366928-58367010
Coord C2 exon
chr1:58367336-58367403
Length
83 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTTTGCGTTCTTCAGGCT
3' ss Score
8.32
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
GTGGGCTTCAGTTTGACACGGACCCGAGTGAACGGACTCCTGTCCTACACA
Seq A exon
GCTGAGGAGGTGGAGGAGTGCAGACTGACCAAGACCAAGAGTGAAGATGAGCTCATACTCTTCATCGACACCAAGAACCTGAA
Seq C2 exon
GGTGAACGTCAAACACTTAGTTGATTCTGACATCCGGCTGGAGCCCCTGACCACAGGTGGAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGTTTGACACGGACCC
R:
CTGTGGTCAGGGGCTCCAG
Band lengths:
103-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]