HsaEX0028235 @ hg38
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6734183-6735958:-
Coord C1 exon
chr19:6735908-6735958
Coord A exon
chr19:6735622-6735704
Coord C2 exon
chr19:6734183-6734307
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGCCCACCCCCCAGACC
3' ss Score
8.7
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTCAGCCGGGTTCGGTCTGGCAGAGTTCGCTCCTATTCA
Seq A exon
ACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTTCCTCATCAACACCAAGGATCTGCA
Seq C2 exon
GGTCCAGGTGCGGAAGTATGGAGAGCAGAAGACGTTGTTTATCTTTCCCGGGCTCCTCCCGGAAGCACCCTCCAAACCAGGGCTCCCGAAGCCACAGGCCACAGTCCCCCGCAAGGTGGATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTCAGTCTCAGCCG
R:
ACCTTGCGGGGGACTGTG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development