BtaEX6038666 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:19011957-19013522:+
Coord C1 exon
chr7:19011957-19012032
Coord A exon
chr7:19012291-19012450
Coord C2 exon
chr7:19013424-19013522
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTTTGTACCCACCCCCGCAGGCT
3' ss Score
9.02
5' ss Seq
ATTGTAAGA
5' ss Score
4.37
Exon sequences
Seq C1 exon
GGTACACCCAGCAGCTGGCCTTCAGACAAAAAAGCTCAGCCTACGCCGCCTTCCAATATCGGCCCCCCAGCACCTG
Seq A exon
GCTGACAGCCTACGTGGTCAAGGTCTTTGCACTGGCCGCCAACCTCATCGCCATAGACTCCAAGGACCTCTGTGAGACCGTCAAATGGCTGATCCTGGAGAAGCAGAAGCCTGATGGAATCTTCCAGGAGGATGGGCCTGTGATACACCAAGAAATGATT
Seq C2 exon
GGTGGCTTCAGGGACACCAGGGAGAAAGATGTGTCCCTTACAGCCTTTGTTCTCATCGCGCTGCACGAGGCTAAAGACATTTGCGAGGCACAGGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'33-36,'33-34,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.7=100)
A:
PF076789=A2M_comp=FE(22.6=100)
C2:
PF076789=A2M_comp=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGGCCTTCAGACAAAA
R:
TTGACCTGTGCCTCGCAAATG
Band lengths:
164-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]