MmuEX6078737 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57353189-57354612:-
Coord C1 exon
chr17:57354537-57354612
Coord A exon
chr17:57354099-57354258
Coord C2 exon
chr17:57353189-57353287
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTATAACTCCCGCCCCCAGGCT
3' ss Score
7.86
5' ss Seq
ATTGTAAGA
5' ss Score
4.37
Exon sequences
Seq C1 exon
GGTACACCCAGCAGCTGGCCTTCAAACAGCCCAGCTCTGCCTATGCTGCCTTCAACAACCGGCCCCCCAGCACCTG
Seq A exon
GCTGACAGCCTACGTGGTCAAGGTCTTCTCTCTAGCTGCCAACCTCATCGCCATCGACTCTCACGTCCTGTGTGGGGCTGTTAAATGGTTGATTCTGGAGAAACAGAAGCCGGATGGTGTCTTTCAGGAGGATGGGCCCGTGATTCACCAAGAAATGATT
Seq C2 exon
GGTGGCTTCCGGAACGCCAAGGAGGCAGATGTGTCACTCACAGCCTTCGTCCTCATCGCACTGCAGGAAGCCAGGGACATCTGTGAGGGGCAGGTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'27-26,'27-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.7=100)
A:
PF076789=A2M_comp=FE(22.6=100)
C2:
PF076789=A2M_comp=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTGGCCTTCAAACAG
R:
ATTGACCTGCCCCTCACAGAT
Band lengths:
166-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: