DreEX6034042 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55334564-55339381:-
Coord C1 exon
chr1:55339306-55339381
Coord A exon
chr1:55337259-55337418
Coord C2 exon
chr1:55334564-55334659
Length
160 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGATTTCTCCTTAAGGTT
3' ss Score
8.97
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTTACAACCAAGAGCTGGCGTATCGTAAATCTGACGGCTCCTTTGCTGCATGGATAAATCGGCCGAGCAGCACCTG
Seq A exon
GTTGACGGCATATGTTGCGAAAGTGTTTGCCATGGCCAGTGACATCATACACATAGACCAGAATGTGATCTGCTCAGCGCTCAGGTGGCTCATAATGAACAGGCAGTTGCCTAATGGAGTCTTCAGGGAAAATGCGCCGGTTATTCACGGAGAAATGACG
Seq C2 exon
GGGAACGTTCAAGGGAGCAACTCAGAAGCGTCCATGACAGCGTTTGTGACCATTGCTCTGCAGGAGGGAAGGAGCCGTTGCAACGGCCAGGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.031
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.8=100)
A:
PF076789=A2M_comp=FE(22.9=100)
C2:
PF076789=A2M_comp=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGCTGGCGTATCGTAA
R:
GAGACCTGGCCGTTGCAAC
Band lengths:
164-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]