BtaEX6038667 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:19011161-19012450:+
Coord C1 exon
chr7:19011161-19011364
Coord A exon
chr7:19011957-19012032
Coord C2 exon
chr7:19012291-19012450
Length
76 bp
Sequences
Splice sites
3' ss Seq
CACATCTCTCTTCCCCGCAGGGT
3' ss Score
12.51
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGACTCCGGTGGCCCAAATGACGGAGGACGCCATCGACGGAGAGCGGCTGAAGCACCTTATCCAAACCCCCTCCGGCTGTGGGGAGCAGAACATGATTGGTATGACGCCCACGGTCATCGCCGTGCACTACCTGGACAGCACCGACCAGTGGGAGAAGTTCGGCTTGGAGAAGCGGCAGGAGTCCCTGGAGCTCATCAGAAAGG
Seq A exon
GGTACACCCAGCAGCTGGCCTTCAGACAAAAAAGCTCAGCCTACGCCGCCTTCCAATATCGGCCCCCCAGCACCTG
Seq C2 exon
GCTGACAGCCTACGTGGTCAAGGTCTTTGCACTGGCCGCCAACCTCATCGCCATAGACTCCAAGGACCTCTGTGAGACCGTCAAATGGCTGATCCTGGAGAAGCAGAAGCCTGATGGAATCTTCCAGGAGGATGGGCCTGTGATACACCAAGAAATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'30-34,'30-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=44.9),PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(10.7=100)
C2:
PF076789=A2M_comp=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCTTATCCAAACCCCCT
R:
AAGACCTTGACCACGTAGGCT
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]