RnoEX6038514 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9734429-9735624:+
Coord C1 exon
chr9:9734429-9734632
Coord A exon
chr9:9735133-9735208
Coord C2 exon
chr9:9735465-9735624
Length
76 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTCTATTCCCTACAGGGT
3' ss Score
10.49
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GGACCCCGGTGGCTCAGATGGCCGAGGACGCTGTGGACGGGGAGCGGCTGAAACACCTGATCGTGACCCCCTCTGGCTGTGGGGAGCAGAACATGATTGGCATGACACCCACGGTCATTGCAGTACACTATCTGGATCAGACCGAACAGTGGGAGAAATTCGGCCTAGAGAAGAGGCAAGAAGCTCTGGAGCTCATCAAGAAAG
Seq A exon
GGTACACCCAGCAGCTGGCTTTCAAACAGCCCAGCTCTGCCTATGCTGCCTTCAACAACCGGCCTCCCAGCACCTG
Seq C2 exon
GCTGACAGCCTATGTGGTCAAGGTCTTCTCTCTGGCTGCCAACCTCATCGCCATCGACTCTCAGGTCCTGTGTGGGGCTGTCAAATGGCTGATTCTGGAGAAACAGAAGCCAGATGGTGTCTTTCAGGAGGACGGACCAGTGATTCACCAAGAAATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'32-43,'32-41,34-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=44.9),PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(10.7=100)
C2:
PF076789=A2M_comp=FE(22.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTGGCATGACACCCACG
R:
ACAGGACCTGAGAGTCGATGG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]