DreEX6034041 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55337259-55340356:-
Coord C1 exon
chr1:55340153-55340356
Coord A exon
chr1:55339306-55339381
Coord C2 exon
chr1:55337259-55337418
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCCCTTTTTGTGTTGAACAGGTT
3' ss Score
9.55
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GAGATACGATCACTATAACCATTGAGAAGGCAATTAGTGGTGCAGCCATGGGCTCCCTGATCATCCAGCCCGGTGGCTGCGGGGAGCAGAACATGATGGGCCTAACAATGCCAGTCATTGCAACACATTATTTGGACAAAACCAATCAGTGGCACACAGTGAGAGCTGGGCTTAGACAGACAGCTACTGAATACATCAGGAAAG
Seq A exon
GTTACAACCAAGAGCTGGCGTATCGTAAATCTGACGGCTCCTTTGCTGCATGGATAAATCGGCCGAGCAGCACCTG
Seq C2 exon
GTTGACGGCATATGTTGCGAAAGTGTTTGCCATGGCCAGTGACATCATACACATAGACCAGAATGTGATCTGCTCAGCGCTCAGGTGGCTCATAATGAACAGGCAGTTGCCTAATGGAGTCTTCAGGGAAAATGCGCCGGTTATTCACGGAGAAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'24-27,'24-25,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=44.9),PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(10.8=100)
C2:
PF076789=A2M_comp=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGGCTTAGACAGACA
R:
GGCGCATTTTCCCTGAAGACT
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]