BtaEX6038671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:19007302-19010263:+
Coord C1 exon
chr7:19007302-19007444
Coord A exon
chr7:19007543-19007755
Coord C2 exon
chr7:19010197-19010263
Length
213 bp
Sequences
Splice sites
3' ss Seq
ATACTCTCTCCCCCTGGCAGGTG
3' ss Score
11.47
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGATCTGTGTGGCTGACCCCTATGAGGTCACTGTGATGCAGGATTTCTTTATCGACCTGCGTCTCCCCTACTCGGTGGTGCGCAACGAGCAAGTGGAGATCCGAGCGATCCTCTACAACTACCGGGAGGCGGAAAATCTCAAG
Seq A exon
GTGAGGGTGGAATTGCTCTACAATCCAGCCTTCTGTAGCCTGGCCACCGCCAAGAAGCGCCACCAGCAGACTATAACAATCCCAGCCAGGTCCTCGGTGGCGGTGCCTTACGTCATTGTGCCCCTGAAGATCGGCCTCCACGAGGTGGAGGTCAAGGCTGCCGTCTACAACCACTTCATCAGTGATGGTGTCAAGAAGACCCTGAAGGTCGTG
Seq C2 exon
CCAGAAGGCGTAAGAGTCAACAAAACTGTGGCTGTTCGTACACTGAATCCAGAACATCTGGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'25-27,'25-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.261
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(48.0=100)
A:
PF0020717=A2M=PD(4.1=5.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTGTGGCTGACCCCTA
R:
TTCTGGATTCAGTGTACGAACAGC
Band lengths:
196-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]