DreEX6034039 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55340831-55342770:-
Coord C1 exon
chr1:55342631-55342770
Coord A exon
chr1:55342321-55342530
Coord C2 exon
chr1:55340831-55340910
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTATCATTTATTGTTGTAGGTA
3' ss Score
9.49
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTATCTGTGTAGCAGATGTCCATGAGATGATAGTAGCAAAGAACTTCTTTATTGACCTAAAGATTCCATATTCAGCTGTGCGCAATGAGCAGATCGAAATCAAAGCCATTATCCACAACTTATACAGTAAGGCAGTGAAG
Seq A exon
GTACGGGTGGAACTGAAGGAAACAAAAGACATCTGCAGCCCAGCTAGTAATAAAGGAAGGTATGCAGTCACAGTGACGGTAGCTTCTAAATCATCATATTCTGTGCCCTTTGTCATCGTCCCGTTGGCTTTGGGACGCCATGCCATTGAAGTAAAGGCGGCTGCTTCCGGACGTGGGAATGATGGTGTCAAAAAAGACCTTTTAGTCGTG
Seq C2 exon
TCTGAAGGCGTTTTGACCAAGATTAGTGAAAATCTACAATTTAATCCTTTCAAGAAAGGTGAGACGATTGTAACAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(46.0=100)
A:
PF0020717=A2M=PD(4.0=5.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTAGCAGATGTCCATGAGA
R:
TGTTTTGTTACAATCGTCTCACCT
Band lengths:
215-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]