RnoEX0015693 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9730146-9733147:+
Coord C1 exon
chr9:9730146-9730288
Coord A exon
chr9:9731759-9731971
Coord C2 exon
chr9:9733081-9733147
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGGCCCTCCCTCCCTTTCAGGTA
3' ss Score
12.68
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGATCTGTGTGGCAGACCCCTATGAGATCACAGTGATGCAGGACTTCTTCATTGACCTGCGACTGCCCTACTCTGTGGTGCGCAATGAACAGGTGGAGATCAGAGCTGTGCTCTTCAATTACCGTGAACAGGAGAAACTTAAG
Seq A exon
GTAAGGGTGGAACTGTTGCATAACCCAGCCTTCTGCAGCATGGCCACTGCCAAGAAGCGGTACTACCAGACCATCGAAATCCCTCCCAAGTCCTCTGTGGCTGTGCCTTATGTCATTGTCCCCTTGAAGATCGGCCTCCAGGAGGTGGAGGTCAAGGCCGCCGTCTTCAACCACTTCATCAGTGATGGTGTCAAGAAGATACTGAAGGTCGTG
Seq C2 exon
CCAGAAGGAATGAGAGTCAACAAAACTGTGGCTGTCCGTACACTGGATCCAGAACACCTCGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'24-30,'24-27,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(48.5=100)
A:
PF0020717=A2M=PD(4.1=5.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCAGACCCCTATGAGA
R:
CTTGACCGAGGTGTTCTGGAT
Band lengths:
204-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]