MmuEX6078732 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57356689-57358363:-
Coord C1 exon
chr17:57358221-57358363
Coord A exon
chr17:57357882-57358094
Coord C2 exon
chr17:57356689-57356755
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTCCCTCCCCTGCAGGTG
3' ss Score
14.26
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGATCTGTGTGGCAGACCCCTATGAGATCAGAGTGATGCAGGACTTCTTCATTGACCTGCGGCTGCCCTACTCTGTAGTGCGCAACGAACAGGTGGAGATCAGAGCTGTGCTCTTCAACTACCGTGAACAGGAGGAACTTAAG
Seq A exon
GTGAGGGTGGAACTGTTGCATAATCCAGCCTTCTGCAGCATGGCCACCGCCAAGAATCGCTACTTCCAGACCATCAAAATCCCTCCCAAGTCCTCGGTGGCTGTACCGTATGTCATTGTCCCCTTGAAGATCGGCCAACAAGAGGTGGAGGTCAAGGCTGCTGTCTTCAATCACTTCATCAGTGATGGTGTCAAGAAGACACTGAAGGTCGTG
Seq C2 exon
CCAGAAGGAATGAGAATCAACAAAACTGTGGCCATCCATACACTGGACCCAGAGAAGCTCGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'21-21,'21-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(48.5=100)
A:
PF0020717=A2M=PD(4.1=5.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCAGACCCCTATGAGA
R:
CTTGACCGAGCTTCTCTGGG
Band lengths:
204-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: