BtaEX6038678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18996474-18998554:+
Coord C1 exon
chr7:18996474-18996683
Coord A exon
chr7:18996819-18997025
Coord C2 exon
chr7:18998396-18998554
Length
207 bp
Sequences
Splice sites
3' ss Seq
ATACCGAACTGTCCCCCCAGATC
3' ss Score
9.41
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTACGCACAAAAAAGGACAATATCCCCGAGGGGCGACAGGCCACCAGGACCATGCAGGCCCTACCCTACAACACCCAGGGGAACTCCAATAACTACCTGCACCTCTCTGTGCCCCGCGTGGAGCTCAAGCCTGGGGAGACTCTCAACGTCAACTTCCACCTGCGCACGGACCCCGGCGAGCAAGCCAAGATCCGCTACTACACCTACATG
Seq A exon
ATCATGAACAAGGGGAAGCTGTTGAAGGTGGGACGCCAGTACCGAGAGCCCGGCCAGGACCTAGTGGTGTTGCCCTTGACCATCACGTCAGACTTCATCCCTTCCTTCCGCCTGGTGGCCTATTACACACTGATTAATGCCAAAGGCCAGAGGGAGGTGGTGGCCGACTCCGTGTGGGTGGATGTCAAGGACTCGTGTATGGGCACG
Seq C2 exon
CTGGTGGTGAAAAATGGTGGGAAGGAAGAGAAACACCATCGACCCGGGCAACAGATAACCCTGAAGATCGAGGCTGACCAGGGGGCCCGAGTGGGGCTCGTGGCCGTGGACAAGGGCGTGTTTGTGCTGAATAAGAAGAACAAATTGACCCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.000 C2=0.302
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(24.7=52.9)
A:
PF077039=A2M_N_2=FE(45.3=100)
C2:
PF077039=A2M_N_2=PD(28.0=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGGCCCTACCCTACAA
R:
ATTCAGCACAAACACGCCCTT
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]