RnoEX0015687 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9725777-9727177:+
Coord C1 exon
chr9:9725777-9725986
Coord A exon
chr9:9726103-9726309
Coord C2 exon
chr9:9727019-9727177
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCAGCCCATTATCCCTCCAGGTT
3' ss Score
8
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTCCGCACCAAGAAGGAGGGTATCCCGGACGCGCGGCAGGCCACCAGGACGATGCAGGCCCAGCCCTACAGCACTATGCACAATTCCAACAACTACCTGCACTTGTCAGTGTCTCGGGTGGAGCTCAAGCCTGGGGACAACCTCAATGTCAACTTCCACCTGCGCACGGACGCTGGCCAAGAGGCCAAGATCCGATACTACACCTATCTG
Seq A exon
GTTATGAACAAGGGGAAGTTACTGAAGGCAGGCCGTCAGGTTCGGGAGCCTGGCCAGGACCTGGTGGTCTTGTCACTGCCCATCACTCCAGAATTTATACCTTCCTTCCGCCTGGTGGCTTACTACACCCTGATTGGAGCTAATGGCCAAAGGGAGGTGGTGGCCGACTCAGTGTGGGTGGATGTGAAGGACTCCTGTGTAGGCACG
Seq C2 exon
CTGGTGGTGAAAGGTGACCCAAGAGATAACCGACAGCCCGCGCCTGGGCATCAAACGACACTAAGGATCGAGGGGAACCAGGGGGCCCGAGTGGGGCTAGTGGCTGTGGACAAGGGGGTGTTTGTGCTGAACAAGAAGAACAAACTCACACAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.000 C2=0.377
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(24.7=52.9)
A:
PF077039=A2M_N_2=FE(45.3=100)
C2:
PF077039=A2M_N_2=PD(28.0=79.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGCACCAAGAAGGAGG
R:
CCTGGTTCCCCTCGATCCTTA
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]