MmuEX6078724 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57361619-57362753:-
Coord C1 exon
chr17:57362544-57362753
Coord A exon
chr17:57362212-57362418
Coord C2 exon
chr17:57361619-57361774
Length
207 bp
Sequences
Splice sites
3' ss Seq
CTAGCCCATCATCCCTCCAGGTT
3' ss Score
7.48
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTCCGCACCAAGAAGGACACTCTCCCAGAATCACGGCAGGCCACCAAGACAATGGAGGCCCATCCCTACAGCACTATGCACAACTCCAACAACTACCTACACTTGTCAGTGTCACGAATGGAGCTCAAGCCGGGGGACAACCTCAATGTCAACTTCCACCTGCGCACAGACCCAGGCCATGAGGCCAAGATCCGATACTACACCTACCTG
Seq A exon
GTTATGAACAAGGGGAAGCTCCTGAAGGCAGGCCGCCAGGTTCGGGAGCCTGGCCAGGACCTGGTGGTCTTGTCCCTGCCCATCACTCCAGAGTTTATTCCTTCATTTCGCCTGGTGGCTTACTACACCCTGATTGGAGCTAGTGGCCAGAGGGAGGTGGTGGCTGACTCTGTGTGGGTGGATGTGAAGGATTCCTGTATTGGCACG
Seq C2 exon
CTGGTGGTGAAGGGTGACCCAAGAGATAACCATCTCGCACCTGGGCAACAAACGACACTCAGGATTGAAGGAAACCAGGGGGCCCGAGTGGGGCTAGTGGCTGTGGACAAGGGAGTGTTTGTGCTGAACAAGAAGAACAAACTCACACAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.000 C2=0.173
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(24.8=52.9)
A:
PF077039=A2M_N_2=FE(45.6=100)
C2:
PF077039=A2M_N_2=PD(27.5=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCACCAAGACAATGGAG
R:
GCACAAACACTCCCTTGTCCA
Band lengths:
298-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: