GgaEX6047428 @ galGal3
Exon Skipping
Gene
ENSGALG00000011509 | C3
Description
NA
Coordinates
chrUn_random:18875800-18878263:-
Coord C1 exon
chrUn_random:18878051-18878263
Coord A exon
chrUn_random:18877761-18877955
Coord C2 exon
chrUn_random:18875800-18875958
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTGCCCACTGCAGATC
3' ss Score
10.4
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GTGAGGACAGACCAGAAGGATCTGCCCCCGGAGCGCCAGGCCTCGCGGCAGATAGTGGCCGAGGCGTATCAAAGCCAGGGGAACTCTGGCAACTACCTTCACCTGGCAGTGGGTGCCAGCCAGGTGCAGCCCGGGGACAACCTCCCCATCAACTTCCATCTCAAGAGCAACAGAGATGACGTCCGCAAATCCGTTTCCTACTTCACCTACCTG
Seq A exon
ATCCTGAGCAAGGGGCACATTGTCCACGTGGGACGGCAGCCAAGGGAAGGTGACCAGAGCCTGGTCACGATGTCGCTTCCCGTGACGGCCAACCTCATCCCTTCCTTCCGTATCGTGGCCTACTACCACGTGAAGCCTGGCGAGATCATTGCTGACTCCGTCTGGGTCGATGTCAAGGACACCTGCATGGGCAGT
Seq C2 exon
CTGGTGGTGAGGGGAGCGTCGGAGGCTGACAATCGTGTGCATGAGCCAAGGACCCCCATGCGGCTGCACATCGAGGGCGACCACAAAGCCCACGTGGGGCTGGTGGCTGTGGACAAGGCTGTCTATGTCCTCAACAAGAACAAACTCACTCAGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011509-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=0.077 C2=0.321
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(25.7=53.5)
A:
PF077039=A2M_N_2=FE(43.2=100)
C2:
PF077039=A2M_N_2=PD(29.1=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTACCTTCACCTGGCAG
R:
GACAGCCTTGTCCACAGCC
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]