BtaEX6038680 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18995236-18996683:+
Coord C1 exon
chr7:18995236-18995319
Coord A exon
chr7:18995420-18995566
Coord C2 exon
chr7:18996474-18996683
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACCTGCCCCTGTACCCACAGGTG
3' ss Score
11.75
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ATCCCCATTGTGACTTCCCCCTACCAGATCCATTTCACCAAGACCCCCAAGTTCTTCAAACCTGCCATGCCCTTCGACCTCATG
Seq A exon
GTGTACGTGACAAACCCCGACGGCTCCCCCGCTCGCCACATCCCGGTGGTGACCCAGGGCAGCAATGTGCAGTCCTTGACCCAGGATGATGGCGTGGCCAAGCTAAGCATCAACACACAGAACAAACGGGATCCCCTGACCATCACC
Seq C2 exon
GTACGCACAAAAAAGGACAATATCCCCGAGGGGCGACAGGCCACCAGGACCATGCAGGCCCTACCCTACAACACCCAGGGGAACTCCAATAACTACCTGCACCTCTCTGTGCCCCGCGTGGAGCTCAAGCCTGGGGAGACTCTCAACGTCAACTTCCACCTGCGCACGGACCCCGGCGAGCAAGCCAAGATCCGCTACTACACCTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.673 C2=0.443
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF077039=A2M_N_2=PU(24.7=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATTGTGACTTCCCCCTA
R:
GCAGGTGGAAGTTGACGTTGA
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]