RnoEX0015686 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9724959-9725986:+
Coord C1 exon
chr9:9724959-9725074
Coord A exon
chr9:9725160-9725306
Coord C2 exon
chr9:9725777-9725986
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTGACTCCGTCCACAGGTG
3' ss Score
11.35
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTAGCGACATGGTAGAGGCAGAGCGCAGTGGGATCCCAATTGTCACTTCCCCGTACCAGATCCACTTCACCAAGACACCCAAATTCTTCAAGCCAGCCATGCCTTTCGACCTCATG
Seq A exon
GTGTTTGTGACCAACCCTGATGGCTCTCCAGCCCGCAGAGTGCCAGTAGTCACTCAGGGATCCGACGCGCAGGCTCTCACCCAGGATGATGGTGTGGCCAAGCTGAGCGTCAACACACCCAACAACCGCCAACCCCTGACTATCACG
Seq C2 exon
GTCCGCACCAAGAAGGAGGGTATCCCGGACGCGCGGCAGGCCACCAGGACGATGCAGGCCCAGCCCTACAGCACTATGCACAATTCCAACAACTACCTGCACTTGTCAGTGTCTCGGGTGGAGCTCAAGCCTGGGGACAACCTCAATGTCAACTTCCACCTGCGCACGGACGCTGGCCAAGAGGCCAAGATCCGATACTACACCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'13-16,'13-13,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.735 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF077039=A2M_N_2=PU(24.7=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCACTTCCCCGTACCAGA
R:
GCGCAGGTGGAAGTTGACATT
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]