MmuEX6078722 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57362544-57363601:-
Coord C1 exon
chr17:57363486-57363601
Coord A exon
chr17:57363254-57363400
Coord C2 exon
chr17:57362544-57362753
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTGACTCTGTCCACAGGTG
3' ss Score
12.19
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTAGTGACATGGTAGAGGCAGAGCGCAGTGGGATCCCGATTGTCACTTCCCCGTACCAGATCCACTTCACCAAGACACCCAAATTCTTCAAGCCAGCCATGCCCTTTGACCTCATG
Seq A exon
GTGTTCGTGACCAACCCCGATGGCTCTCCGGCCAGCAAAGTGCTGGTGGTCACTCAGGGATCTAATGCAAAGGCTCTCACCCAAGATGATGGCGTGGCCAAGCTAAGCATCAACACACCCAACAGCCGCCAACCCCTGACCATCACA
Seq C2 exon
GTCCGCACCAAGAAGGACACTCTCCCAGAATCACGGCAGGCCACCAAGACAATGGAGGCCCATCCCTACAGCACTATGCACAACTCCAACAACTACCTACACTTGTCAGTGTCACGAATGGAGCTCAAGCCGGGGGACAACCTCAATGTCAACTTCCACCTGCGCACAGACCCAGGCCATGAGGCCAAGATCCGATACTACACCTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.449 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF077039=A2M_N_2=PU(24.8=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATGGTAGAGGCAGAGC
R:
GCTTGAGCTCCATTCGTGACA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: