DreEX0017720 @ danRer10
Exon Skipping
Gene
ENSDARG00000012694 | c3a.1
Description
complement component c3a, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-35]
Coordinates
chr1:55497341-55498001:-
Coord C1 exon
chr1:55497886-55498001
Coord A exon
chr1:55497632-55497778
Coord C2 exon
chr1:55497341-55497544
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCCGTCTGCTTTAATAAAAGATC
3' ss Score
3.83
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
GCAGTGAAATGGTGGAAGCAGAAAGGAGAGGAATTCGTATTGTGACGTCTCCATACACTATCAACTTCAAGAAAACAGCTCAATTCTTCAAACCTGGAATGCCCTTCGATGTCTCG
Seq A exon
ATCTACGTAACGAATCCTGATGAGACGCCTGCTCAAAATGTGATAGTGGAGGTCAATCCTGGAGGAGTCAGAGGTCAAACAAAAGCCAATGGCATTGCTAAAGTGACGGTCAACACTCAAGGAAACGTTTTAACACAAGAGATCACT
Seq C2 exon
GCACAAACCAAAGATCCAGACATAACAGACGAAGAGCAAGCAGTGAAGAAGATGACGGCTCATGCTTACGTTCCCAAAGGTGGCTCCAAAAACTACCTGCACATCGGCATTGATGCTGCGGAGCTTGAGATCGGTGATCAAATGAAAGTCAATCTGAACACTGGGCAAAGTCCAGGAGTCAAAGATCAAGATTACACATTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012694-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.388 C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF077039=A2M_N_2=PU(24.6=51.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAGCAGAAAGGAGAGG
R:
GATCACCGATCTCAAGCTCCG
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]