BtaEX6038687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18990578-18992058:+
Coord C1 exon
chr7:18990578-18990770
Coord A exon
chr7:18991717-18991879
Coord C2 exon
chr7:18991988-18992058
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTGGTTCACGCCCAGATC
3' ss Score
4.85
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GTATTCCATGATCACCCCCAACATCCTGCGTCTGGAGAGCGAGGAGACTGTGGTGCTGGAGGCCCACGGAGGACAAGGGACTATTCAGGTCTCGGTCACCGTCCACGACTTCCCGGCCAAGAAACAAGTGCTGTCAAACGAAAACACCCAGCTGAACAGCAACAATGGCTACCTGAGCACCGTCACCATCAAG
Seq A exon
ATCCCGGCCAGCAAAGAGTTAAAATCCGACAAGGGGCACAAGTTCGTGACTGTCGTAGCGACCTTCGGGAATGTCCAGGTGGAGAAGGTGGTGCTGATCAGCCTTCAGAGCGGGTACCTCTTCATCCAGACGGACAAGACCATCTACACCCCAGGCTCCACGG
Seq C2 exon
TCCTCTATCGGGTCTTCACTGTTGACCACAAGCTGCTGCCCGTGGGCCAGACGGTTTTCATCACCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.7=29.1)
C2:
PF0183514=A2M_N=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATCACCCCCAACATCC
R:
TGGTGATGAAAACCGTCTGGC
Band lengths:
254-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]