RnoEX0015697 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9722324-9723180:+
Coord C1 exon
chr9:9722324-9722513
Coord A exon
chr9:9722980-9723013
Coord C2 exon
chr9:9723110-9723180
Length
34 bp
Sequences
Splice sites
3' ss Seq
GTGGTTACCTCTTCATCCAGACA
3' ss Score
5.2
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTACTCCATCATTACTCCCAATGTCCTGCGGCTGGAGAGTGAAGAGACTTTCATACTAGAGGCCCATGATGCTCAGGGTGATGTCCCAGTCACTGTCACTGTGCAAGACTTCCTAAAGAAGCAAGTGCTGACCAGTGAGAAGACAGTGTTGACAGGAGCCACTGGACATCTGAACAGGGTCTCCATCAAG
Seq A exon
ACAGACAAGACCATCTACACCCCAGGCTCCACTG
Seq C2 exon
TTTTCTATCGGATCTTCACTGTGGACAACAACCTATTGCCTGTGGGCAAGACAGTCGTCATCGTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'3-5,'3-4,4-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.7=29.1)
C2:
PF0183514=A2M_N=FE(24.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGTTGACAGGAGCCAC
R:
GACGATGACGACTGTCTTGCC
Band lengths:
114-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]