MmuEX6078714 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57365420-57366305:-
Coord C1 exon
chr17:57366116-57366305
Coord A exon
chr17:57365589-57365754
Coord C2 exon
chr17:57365420-57365490
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCCTGACATCCCACGCATAGATT
3' ss Score
4.4
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTATTCCATCATTACTCCCAATGTCCTACGGCTGGAGAGCGAAGAGACCATCGTACTGGAGGCCCACGATGCTCAGGGTGACATCCCAGTCACAGTCACTGTGCAAGACTTCCTAAAGAGGCAAGTGCTGACCAGTGAGAAGACAGTGTTGACAGGAGCCAGTGGACATCTGAGAAGCGTCTCCATCAAG
Seq A exon
ATTCCAGCCAGTAAGGAATTCAACTCAGATAAGGAGGGGCACAAGTACGTGACAGTGGTGGCAAACTTCGGGGAAACGGTGGTGGAGAAAGCAGTGATGGTAAGCTTCCAGAGTGGGTACCTCTTCATCCAGACAGACAAGACCATCTACACCCCTGGCTCCACTG
Seq C2 exon
TCTTATATCGGATCTTCACTGTGGACAACAACCTACTGCCCGTGGGCAAGACAGTCGTCATCCTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.7=28.6)
C2:
PF0183514=A2M_N=FE(24.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCAATGTCCTACGGCT
R:
GAGGATGACGACTGTCTTGCC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: