BtaEX6039240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22467614-22470650:-
Coord C1 exon
chr7:22470376-22470650
Coord A exon
chr7:22468649-22468785
Coord C2 exon
chr7:22467614-22467932
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCCGTCCCGAGCAGTGG
3' ss Score
5.15
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTCCAGGACTCCCCGGAGTGGGTGGCTTACGTGGGCACCACCTACCTCAGCGGCTCAGAGGCCAGCATGGTGCGGGCCCGCGTGGCCCGGATCATCACACACCCATCCTACAACTCGGACACAGCTGACTTCGACGTGGCGGTGCTGGAGCTGGGCAGACCCCTGCCCTTCAGCCGGCACGTGCAGCCCGTGTGCCTGCCGGCTGCCTCACACATCTTCCCACCAAGGAAGAAGTGCCTCATCTCAGGCTGGGGCTACCTCAAGGAGAACTTCC
Seq A exon
TGGTCAAGCCGGAAATGCTGCAGAAGGCCACTGTGGAGCTGCTGGACCAGGCCCTGTGCACCAGCCTATACGGCCACTCACTCACCGACAGGATGGTGTGTGCTGGCTACCTGGACGGGAAGGTGGATTCCTGCCAG
Seq C2 exon
GGTGACTCGGGGGGCCCCCTGGTCTGCGAGGAGTCCTCCGGCAGGTTCTTCCTGGCTGGCATCGTGAGCTGGGGAATCGGCTGTGCGGAAGCCCAGCATCCAGGGGTCTACGCCCGAGTGACCAGTCTGCGGGACTGGATCCTGGAGACCATCGCTTCTGCAAGCAAGCCTCCAGCCCCCACAGTGGCTCTCGCCTCCACCACTCTCAGCACTGCCTGGCCCACCAGCCCCAAGAGCCTGGTGACTGACACCCTCACCAAACCCACACTGGCCCCTAGCACTATGCCTCTAGACTTGGCCACTGCTTCTAAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.084
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.2=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCACACATCTTCCCAC
R:
CTGGAGGCTTGCTTGCAGAAG
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]