RnoEX0092143 @ rn6
Exon Skipping
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11687957-11690294:-
Coord C1 exon
chr7:11690020-11690294
Coord A exon
chr7:11689045-11689181
Coord C2 exon
chr7:11687957-11688275
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGCCTTATGGGCAGTGG
3' ss Score
3.89
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATTCCAGGACCCTGCGCAATGGGCCGCCCAGGCAGGCAGCGTGCACCTGAGCGGTTCAGAGGCCAGCGCTGTGCGTGCGCGCGTGCTCCGTATCGCCAAGCATCCTGCCTACAACGCGGACACGGCGGACTTTGACGTGGCGGTGCTGGAACTGGCTCGCCCGCTGCCCTTCGGCCGCTATGTGCAGCCTGCCTGCCTTCCCGCGGCCACTCACGTCTTCCCACCGCGCAAGAAGTGCCTGATCTCGGGCTGGGGTTACCTGAAGGAGGACTTCC
Seq A exon
TGGTGAAGCCAGAGGTCCTTCAGAAAGCCACAGTGGAATTGCTGGACCAGAACCTGTGTTCCAGCCTGTATGGCCACTCGCTCACGGACAGGATGGTGTGTGCCGGCTACCTGGACGGGAAGGTGGACTCCTGCCAG
Seq C2 exon
GGTGACTCCGGGGGACCCCTGGTCTGCGAGGAGCCTTCCGGAAGGTTCTTCCTGGCTGGTGTCGTGAGCTGGGGAATCGGCTGTGCAGAAGCACGGCGCCCAGGGGTCTACACCCGAGTCACCAGGCTGCGGGATTGGATCTTGGAGGTGACCAGCTCGGCTGACACGCCCGTGGTCCCCACCGAGGCTCCAGCACCCATCACCCCCAGCACTCCCTGGCCTACCAGCCCCGAGAGCCGGGTGCCCAACACCACTGCTAAACCCACCGTTGCCCCCACCCCTGCGCCACTGCACCCCAGCACTGCGGCCAAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.476
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.2=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGCCAAGCATCCTGCCTA
R:
CGACACCAGCCAGGAAGAAC
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]