DreEX6097823 @ danRer10
Exon Skipping
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10732190-10735701:+
Coord C1 exon
chr22:10732190-10732464
Coord A exon
chr22:10735096-10735238
Coord C2 exon
chr22:10735314-10735701
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTTGTGCCCGAGCAGCTG
3' ss Score
5.93
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAAAACAACCCAAAAGACTGGACAGCTCTTGTGGGTGCCAACCAAGTCAGCGGTGCGGAGGCTGAAGCCTTCATAGTAAACATCAAGTCCCTGGTTATGTCTCCAAAATACGACCCCATGACCACTGACAGTGATGTGACCGTACTGGAGCTGGAAACACCCTTGAAGTTCAGCCATTACGTTCAGCCAGTCTGTATACCATCATCCTCTCATGTTTTCACTCCTGGGCAGAACTGCATAGTATCTGGTTGGGGAGCTCTTAATCAGTACACAA
Seq A exon
CTGAAGTGCCTTCCACATTACAGAAGGCAATCGTGAAGATCATTGACTCGAAAGTCTGCAACAAGTCATCTGTATACAGAGGAGCGCTTACACAAAATATGATGTGTGCTGGTTTTCTTCAAGGCAAGGTGGACTCTTGTCAG
Seq C2 exon
GGAGACTCTGGAGGCCCTCTGGCATGTGAGGTGGCCGCTGGGCGCTATTTCCTAGCAGGAATAGTGAGCTGGGGAGTGGGATGTGCACAGATCAATAAGCCTGGGGTCTATTCCCGTGTCACCAAGCTCCGCAACTGGATTGTGAGCTACACCAAAACTGCACCAGCATTCCAGGAGAACCCCACTGTCCCTAGTGTCACGACCACCGAGGCTCACCATGTGAAAGCTGCAAATCCTTCCTCTGAGCTCACCACTAGTGACTACATCCCTGCTCTTGGGAACTGCAGTGTCAATTATAACTGTGGCAGAGGCATGTGCATCAGCAAGATAAACCCAGAGTGTGACAGAGTCATCGACTGCCCCAATGAAGCCGATGAGAAAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841-'8-12,'8-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.8=100)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PD(19.9=35.4),PF0005713=Ldl_recept_a=WD(100=28.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACTGGAGCTGGAAACACC
R:
CGGGAATAGACCCCAGGCTTA
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]