MmuEX0048185 @ mm9
Exon Skipping
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80351031-80353241:+
Coord C1 exon
chr10:80351031-80351305
Coord A exon
chr10:80352075-80352211
Coord C2 exon
chr10:80352923-80353241
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGCCCTGTGGGCAGTGG
3' ss Score
4.81
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATTCCAGGACCCTGCGCAGTGGGCCGCCCAGGCGGGCAGTGTGCACCTGAGCGGGTCAGAGGCCAGCGCTGTGCGCACACGCGTGCTCCGCATAGCCAAGCATCCTGCCTATGATGCGGACACAGCGGACTTCGACGTGGCGGTGCTGGAGCTGGCGCGCCCGCTGCCCTTCGGACGCTATGTGCAGCCTGCCTGCCTCCCCGCGGCCACGCACGTCTTCCCGCCGGGCAAGAAGTGTCTGATCTCGGGCTGGGGTTACCTGAAAGAGGACTTCC
Seq A exon
TGGTGAAGCCAGAGGTCCTTCAGAAAGCCACGGTGGAATTGCTGGACCAGAGCCTGTGTTCCAGCCTGTACGGCCACTCGCTCACCGACAGGATGGTGTGTGCCGGCTACCTGGACGGGAAGGTAGACTCCTGCCAG
Seq C2 exon
GGGGACTCCGGGGGACCCCTGGTCTGCGAGGAGCCTTCAGGAAGGTTCTTCCTGGCTGGTATCGTGAGCTGGGGAATCGGCTGCGCAGAAGCGCGGCGCCCAGGGGTCTACACCCGAGTCACCAGGCTGCGGGATTGGATCTTGGAGGTGACCAGCGCTGCTGACATGCCTGTGGTCCCCACCGCGACTCCAGCGCCCGCCACCCCCAGCACTCCCTGGCCTACCAGCCCTGAGAGCTGGGCGCCCAACACCTTTGCCAAACCCACCGCTGCCCCCAGCCCTGTGCCACTGCACCCCAGCACTACGGCCAAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-'8-9,'8-8,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.477
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.2=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGCCTATGATGCGGAC
R:
ATTCCCCAGCTCACGATACCA
Band lengths:
252-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: