BtaEX6040002 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013183 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr7:40692152-40693733:-
Coord C1 exon
chr7:40693617-40693733
Coord A exon
chr7:40692581-40692616
Coord C2 exon
chr7:40692152-40692178
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTATGCCTCCTCAGGGT
3' ss Score
9.94
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAGATCCAGGGCAAGATGGAGCTGCTGGGCCTCCAGGGCCTCCAGGACCCCCTGGGGCCCGGGGCCCTCCTGGCGACACTGGGAAAGATGGCCCCAGGGGAGCACCAGGCCCAGAG
Seq A exon
GGTCCCAAAGGAGAAGCTGGACAAGGTGGTGCAACG
Seq C2 exon
GGCCCGAGTGGACCCCCAGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013183-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(52.5=82.1),PF0139113=Collagen=PU(35.6=82.1)
A:
PF0139113=Collagen=FE(17.7=100),PF0139113=Collagen=FE(15.3=100)
C2:
PF0139113=Collagen=FE(12.9=100),PF0139113=Collagen=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]