MmuEX6085235 @ mm9
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51370973-51373535:+
Coord C1 exon
chr11:51370973-51371089
Coord A exon
chr11:51371931-51371966
Coord C2 exon
chr11:51373509-51373535
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTTTTCACATACCTCCTTAGGGT
3' ss Score
9.08
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCTGGACCACCTGGGGCCCGGGGCCCTCCTGGTGACACTGGGAAAGATGGCCCCCGAGGAGCGCAAGGCCCAGCG
Seq A exon
GGTCCCAGAGGAGAGCCCGGACAAGATGGCGAGATG
Seq C2 exon
GGCCCCAAAGGACCTCCAGGACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(55.9=100),PF0139113=Collagen=PU(21.5=43.6)
A:
PF0139113=Collagen=PD(5.9=33.3),PF0139113=Collagen=FE(13.9=100)
C2:
PF0139113=Collagen=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGTTGCAGGACCACC
R:
TTGGGTCCTGGAGGTCCTTTG
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: