GgaEX1016557 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13585052-13591156:+
Coord C1 exon
chr13:13585052-13585078
Coord A exon
chr13:13590775-13590810
Coord C2 exon
chr13:13591130-13591156
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTTTTTTTTGTAGGGT
3' ss Score
10.07
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTGAAGCAGGGGACGTCGGCCCGAGG
Seq A exon
GGTCTTAAAGGCGAGCCAGGGGAGGACGGCCTTGTG
Seq C2 exon
GGTGCCAGGGGACCCCCGGGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.6=100),PF0139113=Collagen=PU(10.7=88.9)
A:
PF0139113=Collagen=FE(18.6=100),PF0139113=Collagen=FE(14.7=100)
C2:
PF0139113=Collagen=FE(13.6=100),PF0139113=Collagen=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]