BtaEX6040010 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013183 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr7:40681591-40682756:-
Coord C1 exon
chr7:40682730-40682756
Coord A exon
chr7:40681729-40681791
Coord C2 exon
chr7:40681591-40681644
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATCTCCCCTTTGCTTCCAGGGC
3' ss Score
10.46
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGCCTTCAGGGGATGCAGGGTCCCAAG
Seq A exon
GGCTTGGATGGAGCAAAGGGAGAGAAGGGCTCGTCGGGTGAGAGAGGACCCACCGGCCTGCCT
Seq C2 exon
GGGCCAGCTGGCCCACCAGGCCTTATTGGGCTGCCAGGAACCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013183-'22-19,'22-18,23-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.7=100)
A:
PF0139113=Collagen=FE(31.7=100)
C2:
PF0139113=Collagen=FE(27.0=100),PF0139113=Collagen=PU(11.3=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGGGATGCAGGGTCC
R:
TCTCTCCTTTGGTTCCTGGCA
Band lengths:
76-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]