MmuEX6085226 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51572758-51574200:+
Coord C1 exon
chr11:51572758-51572784
Coord A exon
chr11:51574001-51574063
Coord C2 exon
chr11:51574147-51574200
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTCTCATTTCCAGGGC
3' ss Score
11.14
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGCCTTCAGGGGATCCAAGGTCCCAAG
Seq A exon
GGCCTGGATGGAGCCAAGGGAGAAAAGGGTACATCGGGTGAGAGAGGCCCTCACGGCCTGCCT
Seq C2 exon
GGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'27-37,'27-32,32-37=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.9=100)
A:
PF0139113=Collagen=FE(32.3=100)
C2:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(11.6=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGGGATCCAAGGTCCC
R:
TCTCTCCTTTGGTTCCTGGCA
Band lengths:
76-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types