BtaEX6040017 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41113087-41119390:-
Coord C1 exon
chr7:41119230-41119390
Coord A exon
chr7:41114265-41114487
Coord C2 exon
chr7:41113087-41113177
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATACTTTAATGTGTTTTCAGTCA
3' ss Score
5.83
5' ss Seq
TCGGTATGA
5' ss Score
7.72
Exon sequences
Seq C1 exon
ATGCGGCATTCCAAAAGAACTCACTGCCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCCCACAGCAGTACGCAAGAGAACAGATATTGTAAACCACATCACCAGTTTAAAGAATCTGATTG
Seq A exon
TCATTATTTAGAAGCAAGGTCCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGATGAATACAGAAATGACTACTGCGAAAGATATGTTCCTAGACATTATCACAGAGACGTTGAAAGCAGTTTTCGAATCCACTGCAGTAAATCTTCAGTCCGAAGCAGGAGAAGCAGTCCTAAAAGGAAGCGTAATAGACACTGTTCAAGTCATCAGTCACATTCG
Seq C2 exon
AAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGTCAAAGTGGAGACGTTCTAAGAGCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414-'4-4,'4-3,9-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.321 C2=0.323
Domain overlap (PFAM):
C1:
PF081797=SspP=WD(100=51.9),PF050777=DUF678=PU(72.3=63.0)
A:
NO
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGGCATTCCAAAAGAACT
R:
ATCTTGCTCTTAGAACGTCTCCAC
Band lengths:
252-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]