DreEX6057007 @ danRer10
Exon Skipping
Gene
ENSDARG00000089372 | clk4a
Description
CDC-like kinase 4a [Source:ZFIN;Acc:ZDB-GENE-030131-576]
Coordinates
chr14:6633185-6637207:-
Coord C1 exon
chr14:6637050-6637207
Coord A exon
chr14:6633853-6634117
Coord C2 exon
chr14:6633185-6633275
Length
265 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCATCATCTTACTAGGCA
3' ss Score
7.74
5' ss Seq
TCGGTATGA
5' ss Score
7.72
Exon sequences
Seq C1 exon
ATGAGACAGACGCAGAGAGAGCGCTCTCCCTGGCTGAGGGAGTTGAGTCTAGAAGACAGAATAATGGAGACCAGAAAGAGACACCGACGAGACTCGCACAGCAGCGAGAGAGAGAACAAATACAGAAAACATCACCATCATTACAAGAACAGCGACGG
Seq A exon
GCATTGCCTTGAGAAAAGAAGCTCAAACGAAAGACTGGACACTAGTGAAAAACACGCAGTGTTCAGAGACCATGAACACAACGGCTACGCTGCCTGTAAAGACAAGGAGAGAAACCGGGACCGATCCAGATCCCGTGAGAGACACCGGGAACGAGAGCGAGATCGAGACTGGCACCATTACAGTAAATCCTCTGGGAACAGCATGCGGAGCAGCCGGCACAGACACCGGCACAGGCACCGCCGTTCACACCCTCACTCTGACTCG
Seq C2 exon
AGGAGCCATCGCAGGAAAAGATCCAGGAGTGTTGAGGATGATGAGGAGGGGCACCTGGTCTATCACAGTGGAGACATGCTGAGAGCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089372-'3-4,'3-2,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=1.000 C2=0.516
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGACAGACGCAGAGAGAGC
R:
GCTCTCAGCATGTCTCCACTG
Band lengths:
244-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]