GgaEX0008579 @ galGal4
Exon Skipping
Gene
ENSGALG00000006057 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr13:13447095-13450273:+
Coord C1 exon
chr13:13447095-13447252
Coord A exon
chr13:13448294-13448519
Coord C2 exon
chr13:13450207-13450273
Length
226 bp
Sequences
Splice sites
3' ss Seq
CACTTAAAATATATTTTCAGTCA
3' ss Score
4.17
5' ss Seq
TCGGTATGA
5' ss Score
7.72
Exon sequences
Seq C1 exon
GAGCAGATGCGTCACTCAAAACAAAGCCACTGCCCTGAGTGGGATGACAGGAGGAGCTGGGATCAGAGAAAGCACAGCAGCAGCCGGAAACGCAGGAAACGGTCCCACAGCAGTGGACAGGAAAGCAAGCACTATAAACCAAATCATGTTTCTGAAAG
Seq A exon
TCATTATTTGGACGATAGAACCATAAATGAAAGAGACCATCATGACCGGAGATATGTTGAGGAGTACAGAAATGACTTCTGTGAAGTATATGACCACAGGCATTATCACAGAGACTATGAAAAGAGTCACCATCATCACTATAGCAAATCCTCTGGTCGGAGCAGGAAAAGTAGTCATAAAAGGAAGCATAAGAGGCATCATTGCTCCAGTCACCAATCACATTCG
Seq C2 exon
ATGAAATTGTTGCGACTTTAGGAGAAGGCGCTTTTGGAAAAGTGGTGGAGTGCATAGATCATGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.737 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(7.0=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCGTCACTCAAAACA
R:
TCATGATCTATGCACTCCACCAC
Band lengths:
220-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]