BtaEX6040018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41109109-41113177:-
Coord C1 exon
chr7:41113087-41113177
Coord A exon
chr7:41112617-41112683
Coord C2 exon
chr7:41109109-41109225
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCCCCTCACTTTAGATG
3' ss Score
10.12
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGTCAAAGTGGAGACGTTCTAAGAGCAAGAT
Seq A exon
ATGAAATCGTGGATACTTTGGGTGAAGGGGCCTTTGGCAAAGTTGTAGAATGCATTGATCATGACAT
Seq C2 exon
GGATGGCATACATGTAGCAGTGAAAATTGTAAAAAACGTGGGACGATATCGTGAAGCAGCTCGTTCAGAAATCCAAGTATTAGAGCATTTAAATAGTACTGATCCCAATAGTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414-'10-7,'10-6,11-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATGATGAGGAGGGTCAC
R:
TTGGGATCAGTACTATTTAAATGCTC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]