DreEX6057008 @ danRer10
Exon Skipping
Gene
ENSDARG00000089372 | clk4a
Description
CDC-like kinase 4a [Source:ZFIN;Acc:ZDB-GENE-030131-576]
Coordinates
chr14:6629890-6633275:-
Coord C1 exon
chr14:6633185-6633275
Coord A exon
chr14:6632812-6632878
Coord C2 exon
chr14:6629890-6630006
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCTTTAAACCCGTAGATG
3' ss Score
8.53
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGGAGCCATCGCAGGAAAAGATCCAGGAGTGTTGAGGATGATGAGGAGGGGCACCTGGTCTATCACAGTGGAGACATGCTGAGAGCAAGAT
Seq A exon
ATGAGATTGTGTGTACACTTGGAGAAGGAGCCTTTGGCAAAGTGGTGGAGTGCATTGATCATGAAAA
Seq C2 exon
AGTTGGAGCTCGCATTGCGCTGAAGATCATTAAAAATATTGAGCGCTATCGTGATGCGGCTCTATCTGAGGTTGAGGTGCTGGAGCAGATTAACTCGCTAGACTGTGACAGGCGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089372-'6-6,'6-5,7-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=PU(12.9=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCATCGCAGGAAAAGAT
R:
TCCAGCACCTCAACCTCAGAT
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]