GgaEX1015772 @ galGal4
Exon Skipping
Gene
ENSGALG00000006057 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr13:13449713-13451433:+
Coord C1 exon
chr13:13449713-13449803
Coord A exon
chr13:13450207-13450273
Coord C2 exon
chr13:13451317-13451433
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTTTGTTCTTTTTAGATG
3' ss Score
10.1
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
AAGAGTCACCGAAGGAAAAGATCCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTGAAAGTGGAGACGTTCTAAGAGCAAGAT
Seq A exon
ATGAAATTGTTGCGACTTTAGGAGAAGGCGCTTTTGGAAAAGTGGTGGAGTGCATAGATCATGATAT
Seq C2 exon
GAGAGGAATGCATGTAGCAGTTAAAATAGTGAAAAATGTTGGTAGATACCGAGAGGCGGCCCGCTCAGAAATACAGGTGTTGGAACACTTGAACACCATGGATCCCAGCAGCACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057-'8-9,'8-8,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(7.0=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGAGGAGGGTCACC
R:
CTGCTGGGATCCATGGTGTTC
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]