BtaEX6040021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41108177-41109017:-
Coord C1 exon
chr7:41108851-41109017
Coord A exon
chr7:41108557-41108651
Coord C2 exon
chr7:41108177-41108306
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTGTTCTTTTGTAGTTT
3' ss Score
9.87
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTATTCGAACTCTTGGGACTTAGTACCTATGATTTCATTAAAGAAAATAGCTTTCTGCCATTTCAAATTGACCACATCAGGCAAATGGCATATCAGATCTGCCAGTCAATAAATT
Seq A exon
TTTTGCATCATAATAAATTAACCCATACAGATCTGAAGCCTGAAAATATTTTATTTGTGAAGTCTGACTATGTAGTCAAATATAATTCTAAAATG
Seq C2 exon
AAACGTGATGAACGCACACTGAAAAACACAGATATCAAAGTTGTTGACTTTGGAAGTGCAACATACGATGATGAACATCATAGTACTTTGGTATCTACACGGCATTACAGAGCTCCAGAGGTCATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(9.8=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCACATCAGGCAAATGGC
R:
CTCTGGAGCTCTGTAATGCCG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]