RnoEX0021851 @ rn6
Exon Skipping
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36728938-36729755:+
Coord C1 exon
chr10:36728938-36729104
Coord A exon
chr10:36729285-36729379
Coord C2 exon
chr10:36729626-36729755
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTTTCCTTTGTAGTTT
3' ss Score
10.49
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAGCTGCTGGGCCTTAGTACCTATGATTTTATTAAAGAAAACAGCTTTCTGCCATTTCAAATTGATCACATCAGGCAAATGGCTTATCAGATCTGCCAATCTATAAATT
Seq A exon
TTTTACATCATAATAAATTAACACACACGGATCTAAAACCTGAAAATATTTTATTTGTAAAGTCTGACTATGTGGTCAAATACAATTCTAAAATG
Seq C2 exon
AAACGAGATGAGCGCACGTTGAAAAACACAGATATCAAAGTTGTTGACTTTGGAAGTGCGACATATGACGATGAACATCATAGTACTTTGGTGTCCACAAGACACTACAGGGCTCCAGAGGTCATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714-'14-15,'14-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.0=100)
A:
PF0006920=Pkinase=FE(10.5=100)
C2:
PF0006920=Pkinase=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTGCTGGGCCTTAGTA
R:
TGTCGCACTTCCAAAGTCAACA
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]