DreEX0022162 @ danRer10
Exon Skipping
Gene
ENSDARG00000005908 | clk4b
Description
CDC-like kinase 4b [Source:ZFIN;Acc:ZDB-GENE-050227-19]
Coordinates
chr21:32250414-32251269:-
Coord C1 exon
chr21:32251103-32251269
Coord A exon
chr21:32250920-32251014
Coord C2 exon
chr21:32250414-32250543
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTATTTGCTATTAGTTC
3' ss Score
5.14
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TGCTTGTGTCCGGATGCTTGACTGGTTCGATCACCACGGCCACATCTGCATAGTGTTTGAGCTGCTGGGTCTGAGCACATATGACTTCCTGAAGGAGAATGGATTCATGCCTTTCTCGCTGACCCAGATTAGACACATGGCGGACCAGATCTTTAGGGCTGTGCGCT
Seq A exon
TTCTGCATAAAAATAAGTTGACGCACACTGACCTGAAGCCTGAAAACATTCTCTTTGTGGACTCCAACTATGACATTAAATATAACTCAAGGATG
Seq C2 exon
AAGCGAGATGAGAGGACCTTAAAGAGGTTGGATGTGAAAGTGGTGGACTTTGGCAATGCCACGTATGACCATGAACATCACACCTCTGTTGTTTCAACCCGTCATTACAGAGCTCCTGAAGTCATACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005908_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(9.8=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGCCTTTCTCGCTGACC
R:
AGGAGCTCTGTAATGACGGGT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]