MmuEX6085218 @ mm10
Exon Skipping
Gene
ENSMUSG00000020385 | Clk4
Description
CDC like kinase 4 [Source:MGI Symbol;Acc:MGI:1098551]
Coordinates
chr11:51275412-51276247:+
Coord C1 exon
chr11:51275412-51275578
Coord A exon
chr11:51275770-51275864
Coord C2 exon
chr11:51276118-51276247
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTTTCCGTTGTAGTTT
3' ss Score
9.89
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCGATGCGTCCAGATGCTAGAGTGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAGCTGCTGGGACTTAGTACCTATGATTTTATTAAAGAAAATAGTTTTCTGCCATTTCAAATTGATCACATCAGGCAAATGGCTTATCAGATCTGCCAGTCTATAAATT
Seq A exon
TTTTACATCATAATAAATTAACACACACGGACCTAAAACCTGAAAATATTTTATTTGTGAAGTCTGACTATGTAGTCAAATACAATTCTAAAATG
Seq C2 exon
AAACGAGATGAGCGCACATTGAAAAACACAGATATCAAAGTTGTTGATTTTGGAAGTGCAACATATGACGACGAACATCATAGTACTTTGGTGTCCACAAGGCACTACAGGGCTCCAGAGGTCATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020385-'28-26,'28-25,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(10.5=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCACATCAGGCAAATGGC
R:
CCAAAATGACCTCTGGAGCCC
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types