DreEX6057009 @ danRer10
Exon Skipping
Gene
ENSDARG00000089372 | clk4a
Description
CDC-like kinase 4a [Source:ZFIN;Acc:ZDB-GENE-030131-576]
Coordinates
chr14:6629136-6629707:-
Coord C1 exon
chr14:6629541-6629707
Coord A exon
chr14:6629351-6629445
Coord C2 exon
chr14:6629136-6629265
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTGCCGGTTCAGTTC
3' ss Score
8.15
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGCTTGTGTGCGGATGTACGACTGGTTTGATCACCACGGGCACATCTGCATTGCCTTTGAGCTGCTGGGCTTGAGCACGTATGATTTTCTGAAGGAAAATAACTTTCAGCCCTTCTATATCAACCACATCAGGCACATGGCCTACCAGATCATCAGAGCAGTCAGAT
Seq A exon
TTCTTCACAAGAACAAGCTGACACACACTGACCTGAAGCCAGAGAACATCCTCTTTGTTAATTCGGAGTATAACATTAGGTACAACTCAAAAATG
Seq C2 exon
AAGAGGGATGAGAGAACTGTGAAGAATCCTGATGTAAAAGTGGTGGATTTTGGGAATGCAACATACGAGCATGAGCATCATACATCCGTAGTGTCCACACGGCATTATAGAGCTCCAGAGGTTATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089372-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(10.5=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGCTGCTGGGCTTGAG
R:
TGCTCGTATGTTGCATTCCCA
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]