BtaEX6040277 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45211906-45212399:-
Coord C1 exon
chr7:45212264-45212399
Coord A exon
chr7:45212078-45212190
Coord C2 exon
chr7:45211906-45211977
Length
113 bp
Sequences
Splice sites
3' ss Seq
AACACCTCTTCTGCCTCCAGGCC
3' ss Score
9.9
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTTGTGGCCATCATCTCAGAGGCCTCCAGCTCCGGTGTCTCCCTCCAAGCTGACCGCCGGGTGCAGAACCAGCGGCGCCGGGTGCACATGACGCTGGAGCTGCCCTGGAGCGCTGACCGAGCCATCCAGCAGTTTG
Seq A exon
GCCGGACCCACCGCTCCAACCAGGTCTCTGCGCCGGAGTATATCTTCCTCATTTCAGAGCTGGCAGGGGAGCGCAGGTTTGCTTCCATCGTGGCCAAGCGGCTGGAGAGCCTG
Seq C2 exon
GGGGCTCTGACCCATGGGGACCGCCGTGCCACTGAGTCCCGGGACCTGAGCAAGTACAACTTTGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'29-36,'29-35,30-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.079 C2=0.125
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(16.1=100)
A:
PF138711=Helicase_C_4=FE(13.3=100)
C2:
PF138711=Helicase_C_4=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGCCATCATCTCAGAGG
R:
TCTCAAAGTTGTACTTGCTCAGGT
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]