MmuEX6049752 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80060590-80061119:-
Coord C1 exon
chr10:80060984-80061119
Coord A exon
chr10:80060789-80060901
Coord C2 exon
chr10:80060590-80060661
Length
113 bp
Sequences
Splice sites
3' ss Seq
TACAGCCTTTCTGCCCTCAGGCC
3' ss Score
9.69
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTCGTGGCTATTATCTCTGAGGCCTCCAGCTCAGGTGTCTCCCTCCAAGCCGACCGTCGAGTCCAGAACCAGCGGCGCCGGGTACACATGACCCTGGAGCTGCCTTGGAGTGCAGACCGTGCCATTCAACAGTTTG
Seq A exon
GCCGCACCCACAGGTCCAACCAGGTCTCAGCACCCGAGTACGTCTTCCTTATCTCAGAACTGGCAGGGGAGCGCAGGTTTGCCTCCATTGTGGCCAAGCGGCTCGAAAGTCTG
Seq C2 exon
GGTGCCCTCACCCATGGAGATCGCCGCGCCACTGAGTCCCGAGACCTGAGCAAGTACAACTTTGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-'56-66,'56-64,57-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.079 C2=0.167
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(16.1=100)
A:
PF138711=Helicase_C_4=FE(13.3=100)
C2:
PF138711=Helicase_C_4=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTATTATCTCTGAGGCC
R:
TTCTCAAAGTTGTACTTGCTCAGGT
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types