GgaEX6028008 @ galGal4
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2864953-2866760:-
Coord C1 exon
chr28:2866625-2866760
Coord A exon
chr28:2865866-2865978
Coord C2 exon
chr28:2864953-2865024
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCATGTCCCTGTAGGTC
3' ss Score
12.34
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CTTGTAGCAATAATCTCTGAGGCCTCCAGCTCAGGAATCTCTCTCCAAGCAGACAGACGGGTGAAAAACCAGAAGCGCCGCGTCCACATGACACTGGAGCTGCCCTGGAGTGCAGACCGTGCCATTCAGCAGTTCG
Seq A exon
GTCGAACGCACCGATCAAACCAAGTTTCTGCTCCAGAGTATGTCTTCCTTATCTCTGAGCTAGCTGGAGAGAGGAGGTTTGCCTCCATCGTGGCAAAACGACTGGAGAGCCTA
Seq C2 exon
GGTGCCTTAACTCACGGAGACCGGAGGGCCACTGAATCCCGAGACCTCAGCAAGTACAACTTTGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672-'33-37,'33-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.079 C2=0.083
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(16.1=100)
A:
PF138711=Helicase_C_4=FE(13.3=100)
C2:
PF138711=Helicase_C_4=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAGCAATAATCTCTGAGGCCT
R:
TCTCAAAGTTGTACTTGCTGAGGT
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]